Scripts of the NMRPipe System
view2D.tcl: 2D Spectral Viewer with Overlay and Zoom.
With a Single Spectrum:
Flag |
Argument |
Default |
Description |
-in |
name1 |
|
Spectrum Name |
With Two Spectra:
-in1 |
inName1 |
|
Spectrum 1 Name |
-in2 |
inName2 |
|
Spectrum 2 Name |
With a Spectral Series:
-in |
inList |
|
Spectrum Name List |
Contour Drawing:
-plev |
pCount |
|
Positive Contour Count |
-nlev |
nCount |
|
Negative Contour Count |
-mult |
c |
|
Factor for Auto-Estimate of First Contour |
-factor |
f |
|
Factor for Contour Spacing |
-hi |
hi |
|
First Contour Height |
-hi1 |
hi1 |
|
First Contour Height, Spectrum 1 |
-hi2 |
hi2 |
|
First Contour Height, Spectrum 2 |
General Arguments:
-align |
|
|
Align by PPM (Approximate). |
-one |
|
|
Configure for One Spectrum |
-two |
|
|
Configure for Two Spectra (Default) |
-grid |
|
|
Use Grid Lines for Contours (Default). |
-nogrid |
|
|
No Grid Lines for Contours. |
-cont |
|
|
Contour Displays (Default) |
-pix |
|
|
Pixmap Displays |
-pts |
|
|
Zoom Region Coords in Points |
-ppm |
|
|
Zoom Region Coords in PPM |
-xSize |
xPix |
|
Default X-Axis Window Size |
-ySize |
yPix |
|
Default Y-Axis Window Size |
-export |
eName |
|
Special Procedure for Region Export |
-tab |
tabName |
|
Peak Table Name or List |
-tabView |
|
|
Enable Peak Table Viewing. |
-notabView |
|
|
Disable Peak Table Viewing (Default). |
Color Arguments:
-posColor1 |
posColor |
|
Positive Contour Drawing Color |
-negColor1 |
negColor |
|
Negative Contour Drawing Color |
-posColor2 |
posColor |
|
Positive Contour Drawing Color |
-negColor2 |
negColor |
|
Negative Contour Drawing Color |
-posColors |
posColors |
|
Positive Contour Drawing Color List |
-negColors |
negColors |
|
Negative Contour Drawing Color List |
-peakColor |
pkColor |
|
Peak Label Color |
-bgColor |
bgColor |
|
Contour Background Color |
-labelColor |
lColor |
|
Label Color |
-shadowColor |
sColor |
|
Label Shadow Color |
-zoomColor |
zColor |
|
Zoom Box Color |
-cursorColor |
cColor |
|
Cursor Color |
-gridColor |
gColor |
|
Grid Color |
-boxColor |
bColor |
|
Outline Box Color |
-proposeColor |
pColor |
|
Selected Region Box Color |
-acceptColor |
aColor |
|
Accepted Region Box Color |
|
|