Scripts of the NMRPipe System
simCS.tcl: Prepare Simulated-Only Backbone Chemical Shifts from PDB.
Flag |
Argument |
Default |
Description |
-pdb |
pdbName |
ref.pdb |
PDB Input Name. |
-in |
csInName |
None |
Optional CS Input Name (Also: -cs). |
-out |
csOutName |
csSim.tab |
Chemical Shift Output Name. |
-verb |
|
|
Verbose Table Output ON (Default). |
-noverb |
|
|
Verbose Table Output OFF. |
Ring Current Shift Calculation:
-hms |
hmsName |
hmsInfo.tab |
Output for Ring Definitions. Use 'None' for no Calculation. |
-hmsAdd |
|
|
Add Ring Current Shifts to Predicted Shifts (Default). |
-hmsSub |
|
|
Subtract Ring Current Shifts from Observed Shifts. |
-hmsNone |
|
|
Ring Current Shifts are calculated but not used for adjustment. |
|
|