Scripts of the NMRPipe System
orientDC.tcl: Find Optimal Orientation for Two Domains Using Dipolar Couplings.

Flag	Argument	Default	Description
`-ref`	`refPDBName`	`ref.pdb`	Reference (Fixed) PDB Input File.
`-pdb`	`rotPDBName`	`rot.pdb`	PDB Input File To Be Rotated.
`-dc`	`dcNameList`	`dObs*.tab`	DC Input Tables.
`-tab`	`tabName`	`orient.tab`	Output Table of Orientation Maxima.
`-save`			Save Surfaces surf*/r%03d.dat
`-nosave`			No Surface File Output (Default).
`-verb`			Verbose Mode ON (Default).
`-noverb`			Verbose Mode OFF.
`-ignore`			Ignore Seg/Chain Information.
`-exit`			Exit After Grid Search is Complete.

PDB Output Templates:

`-or`	`orPDBName`	`orient%d.pdb`	Output of Rotated PDB.
`-out`	`outName`	`complex%d.pdb`	Output of Rotated PDB and Ref.
`-n`	`bestCount`	`2`	Number of Orientations to Save.

Rotation Grid Search Parameters, Degrees: