Scripts of the NMRPipe System
fragSA.tcl: DYNAMO Simulated Annealing Refinment of MFR Fragments.

Flag	Argument	Default	Description
`-gmc`	`gmcDir`	`frag.gmc`	GMC Input Directory.
`-in`	`inName`	`fragTmp.pdb`	PDB Input File for Fragment.
`-out`	`outName`	`frag.pdb`	PDB Output File of Refined Fragment.
`-r1`	`r1`	`First`	First Residue ID to Use from Input.
`-rN`	`rN`	`Last`	Last Residue ID to Use from Input
`-ac`	`acName`	`None`	Alternate AC Constraint File.
`-tor`	`tName`	`None`	Alternate Torsion Constraint File.
`-iseed`	`iseed`	`54321`	Random Number Seed.
`-rem`	`rem`		Remark Text to Add to Output PDB.