Programs of the NMRPipe System
nmr2Mask: Create a Binarized Labeled Mask from NMRPipe-format Data
Flag |
Argument |
Default |
Description |
-in |
inName |
test.ft2 |
Input Name. |
-out |
outName |
mask.dat |
Output Name. |
-reg |
ix1 ix3 iy1 iy3 |
0 0 0 0 |
Point Coords of Region to Analyze. |
-max |
maxThresh |
+1.0 |
Positive Threshold for Binarization. |
-min |
minThresh |
-MAX |
Negative Threshold for Binarization. |
Special Mask and Labeling Options:
-ed |
|
|
erosDilProg Controls Erosion/Dilation. Example: Erode/Erode/Dilate = -ed EED |
-label |
|
|
Count and Label Components. |
-sym |
|
|
Perform symmetry analysis. |
|
|