Programs of the NMRPipe System
delta2pipe: JEOL Delta to NMRPipe-Format Automated Conversion
Flag |
Argument |
Default |
Description |
-in |
inName |
|
Delta jdf Input. |
-out |
outTemplate |
|
NMRPipe Output. |
-ov |
|
|
Force Overwrite. |
-nodir |
|
|
Suppress Directory Creation. |
-nofs |
|
|
Suppress File Size Check. |
Special Digital Filter Parameters:
-df |
|
|
Perform DF Adjustment During Conversion. |
-nodf |
|
|
Perform DF Adjustment During Processing. |
-realOnly |
|
|
All-Real Output Only, No DF Adjustment. |
-dfVal |
df |
Auto |
DF Adjustment Value, Points. |
-trVal |
tr |
Auto |
TR Adjustment Value, Fraction. |
-skip |
sV |
-1 |
Points to Skip in Head Correction. (Use -1 for No Correction) |
-zf |
|
|
Temporary Zero Fill for Speed. (Default) |
-nozf |
|
|
No Temporary Zero Fill. |
Informational Output:
-showHdr |
|
|
Show Delta Header Info. |
-showParm |
|
|
Show Delta Parameter Info. |
-showRuler |
|
|
Show Delta Ruler Info. |
-verb |
|
|
Show Conversion Status. |
-all |
|
|
Show All Info Above. |
-info |
|
|
Show Info Only, No Conversion. |
-showTCL |
|
|
Show TCL Conversion Text. |
General Conversion Arguments:
-nohdr |
|
|
Ignore General Header Arguments. |
General Header Arguments:
-fdata |
loc val ... |
|
Adjust File Header. |
-u1 |
u1 |
0.0 |
User Parameter 1. |
-u2 |
u2 |
0.0 |
User Parameter 2. |
-u3 |
u3 |
0.0 |
User Parameter 3. |
-u4 |
u4 |
0.0 |
User Parameter 4. |
-u5 |
u5 |
0.0 |
User Parameter 5. |
-ndim |
ndim |
0 |
Number of Dimensions. |
-tau |
tau |
0 |
Tau Value. |
-day |
day |
0 |
Day. |
-month |
month |
0 |
Month (1-12). |
-year |
year |
0 |
Year. |
-hours |
h |
0 |
Hours (0-23) |
-mins |
m |
0 |
Minutes (0-59) |
-secs |
s |
0 |
Seconds (0-59) |
-temp |
t |
0.0 |
Temperature, Degrees C. |
-aq2D |
aq2D |
0 |
2D Acquisition Code or Keyword: 0=Magnitude. 1=TPPI. 2=States. 3=Image. |
-pipeFlag |
pipeFlag |
0 |
0=Multi-File Data. 1=Pipeline Stream or Single File. |
-tpFlag |
tpFlag |
0 |
0=Not Transposed. 1=Transposed. |
Header Labels:
-srcName |
src |
|
Source File Name (16 Characters Max). |
-operName |
oper |
|
Operator Name (32 Characters Max). |
-userName |
user |
|
User Name (16 Characters Max). |
-comment |
comment |
|
Comment (160 Characters Max). |
-title |
title |
|
Title (60 Characters Max). |
Axis-Specific Header Flags -x.. -y.. etc:
-xN |
xN |
0 |
Actual Size in File Pts Real + Imag. |
-xT |
xT |
0 |
Current Time Domain Size Pts Real or Imag. |
-xSW |
xSW |
0.0 |
Full Spectral Width Hz. |
-xOBS |
xOBS |
0.0 |
Observe Frequency MHz. |
-xCAR |
xCAR |
0.0 |
Carrier Position ppm. |
-xLAB |
xLAB |
None |
Axis Label 8 Chars, No Spaces. |
-xMODE |
xMODE |
0 |
Acquisition Mode Code or Keyword: 0=Complex,States,Complex-N,States-N. 0=States-TPPI,States-TPPI-N. 1=Real,TPPI. 2=Sequential,Bruker. |
-xALT |
xALT |
0 |
Sign Adjustment Code or Keyword: 0=Complex,States No Alternation Needed. 0=Real,TPPI No Alternation Needed. 1=Sequential,Bruker Real Alternation. 2=States-TPPI Complex Alternation. With Negation of Imaginaries: 16=Complex-N No Alternation Needed. 16=States-N No Alternation Needed. 18=States-TPPI-N Complex Alternation. |
Axis-Specific Header Flags -xQ -yQ etc. Not required for conversion. Used to adjust header:
-xTD |
xTD |
|
Original Time Domain Size. Pts. |
-xFD |
xFD |
|
Final Max Freq Domain Size. Pts. |
-xZFP |
xZFP |
|
Zero Fill Parameter. Pts (Negative). |
-xMID |
xMID |
|
Carrier Virtual Loc. Pts. |
-xORIG |
xORIG |
|
Last Point Coord. Hz. |
-xDIM |
xDIM |
|
Dimension Order. 2=Original X-Axis 1=Original Y-Axis 3=Original Z-Axis 4=Original A-Axis |
-xFT |
xFT |
|
Fourier Flag Code or Keyword: 0=Time Time-Domain Data. 1=Freq Frequency-Domain Data. |
Special Acquisition-Axis Flags (no longer required):
-aqN |
aqN |
|
Actual Size. Pts Real or Imag. |
-aqMODE |
aqMODE |
|
Acquisition Mode. 0=Complex. 1=Real. 2=Sequential. |
Axis-Specific Processing Values -xQ -yQ etc:
-xAPOD |
xAPOD |
|
Apodize Function SP EM GM TM TRI or NONE. |
-xQ1 |
xQ1 |
|
Apodize Parameter 1. Depends on Function. |
-xQ2 |
xQ2 |
|
Apodize Parameter 2. Depends on Function. |
-xQ3 |
xQ3 |
|
Apodize Parameter 3. Depends on Function. |
-xC1 |
xC1 |
|
First Point Scale. Default is 1.0. |
-xP0 |
xP0 |
|
Zero Order Phase. Degrees. |
-xP1 |
xP1 |
|
First Order Phase. Degrees. |
|
|